PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004457.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 194aa    MW: 21474.9 Da    PI: 8.0723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004457.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19555155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  Itr_sc004457.1_g00001.1  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMNG 55
                             59*******9.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-35565No hitNo description
Gene3DG3DSA:3.30.730.105.1E-33664IPR001471AP2/ERF domain
PROSITE profilePS5103222.102663IPR001471AP2/ERF domain
SMARTSM003808.3E-40669IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20664IPR016177DNA-binding domain
PfamPF008471.4E-12655IPR001471AP2/ERF domain
PRINTSPR003671.1E-10718IPR001471AP2/ERF domain
PRINTSPR003671.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT  60
NFPVAANKDG KEDKSSSSTA SSSSSSSSSL SAILSAKLRK CCKSLSPSLT CLRLDTENSN  120
IGVWQKRAGT SSDSNWVMTV ELGNKQQPPT KQESLSSETS EHTRDAVIVD DGNQTVNEEE  180
KIALQMIEEL LNEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-18267167ATERF1
3gcc_A8e-18267167ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1714191e-96GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence.
GenBankGU1715511e-96GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268413.28e-88PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI334e-80WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLS8CLD51e-88S8CLD5_9LAMI; Uncharacterized protein
STRINGGSMUA_Achr9P28540_0015e-85(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-66ERF family protein